MRIQC: individual T1w report

Summary

Subject ID: 050_ExercisePre.
Date and time: 2018-05-07, 00:26.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2883701820570884
cnr			4.424431769125269
efc			0.5770634002432979
fber			106.77566528320312
fwhm	avg		3.85327
fwhm	x		3.60357
fwhm	y		4.1766
fwhm	z		3.77964
icvs	csf		0.18629583898051227
icvs	gm		0.48013529791011317
icvs	wm		0.33356886310937456
inu	med		0.8874161243438721
inu	range		0.3103475600481034
qi	1		0.0
qi	2		0.001090714405587621
rpve	csf		29.14344231697666
rpve	gm		13.107510277636989
rpve	wm		21.068309384519992
size	x		180
size	y		256
size	z		256
snr	csf		2.326651541708254
snr	gm		10.650393664177079
snr	total		10.941717053303215
snr	wm		19.84810595402431
snrd	csf		15.43196916013135
snrd	gm		32.2935816344179
snrd	total		32.57528161860217
snrd	wm		50.00029406125728
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.0201088450034224
summary	bg	mad	13.102852821350098
summary	bg	mean	51.28678512573242
summary	bg	median	50.339996337890625
summary	bg	n	2801848.0
summary	bg	p05	31.11295585632324
summary	bg	p95	75.10973892211913
summary	bg	stdv	13.805499076843262
summary	csf	k	1.393574468844169
summary	csf	mad	143.3929443359375
summary	csf	mean	321.27520751953125
summary	csf	median	308.642333984375
summary	csf	n	10797.0
summary	csf	p05	142.59908752441407
summary	csf	p95	539.0927734374995
summary	csf	stdv	132.64901733398438
summary	gm	k	0.20676408502270505
summary	gm	mad	58.84991455078125
summary	gm	mean	646.4539184570312
summary	gm	median	645.8778076171875
summary	gm	n	43941.0
summary	gm	p05	547.7691650390625
summary	gm	p95	748.0177001953125
summary	gm	stdv	60.64287185668945
summary	wm	k	1.033733019250005
summary	wm	mad	43.27281951904297
summary	wm	mean	996.7146606445312
summary	wm	median	1000.0154418945312
summary	wm	n	160939.0
summary	wm	p05	904.2967224121094
summary	wm	p95	1073.0878662109376
summary	wm	stdv	50.383262634277344
tpm	overlap	csf	0.2101425975561142
tpm	overlap	gm	0.5417741537094116
tpm	overlap	wm	0.53956139087677
wm2max			0.7075749825412994

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	1834379f8ff8414c94a04eac75bc8540
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.