MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2883701820570884
cnr4.424431769125269
efc0.5770634002432979
fber106.77566528320312
fwhmavg3.85327
fwhmx3.60357
fwhmy4.1766
fwhmz3.77964
icvscsf0.18629583898051227
icvsgm0.48013529791011317
icvswm0.33356886310937456
inumed0.8874161243438721
inurange0.3103475600481034
qi10.0
qi20.001090714405587621
rpvecsf29.14344231697666
rpvegm13.107510277636989
rpvewm21.068309384519992
sizex180
sizey256
sizez256
snrcsf2.326651541708254
snrgm10.650393664177079
snrtotal10.941717053303215
snrwm19.84810595402431
snrdcsf15.43196916013135
snrdgm32.2935816344179
snrdtotal32.57528161860217
snrdwm50.00029406125728
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.0201088450034224
summarybgmad13.102852821350098
summarybgmean51.28678512573242
summarybgmedian50.339996337890625
summarybgn2801848.0
summarybgp0531.11295585632324
summarybgp9575.10973892211913
summarybgstdv13.805499076843262
summarycsfk1.393574468844169
summarycsfmad143.3929443359375
summarycsfmean321.27520751953125
summarycsfmedian308.642333984375
summarycsfn10797.0
summarycsfp05142.59908752441407
summarycsfp95539.0927734374995
summarycsfstdv132.64901733398438
summarygmk0.20676408502270505
summarygmmad58.84991455078125
summarygmmean646.4539184570312
summarygmmedian645.8778076171875
summarygmn43941.0
summarygmp05547.7691650390625
summarygmp95748.0177001953125
summarygmstdv60.64287185668945
summarywmk1.033733019250005
summarywmmad43.27281951904297
summarywmmean996.7146606445312
summarywmmedian1000.0154418945312
summarywmn160939.0
summarywmp05904.2967224121094
summarywmp951073.0878662109376
summarywmstdv50.383262634277344
tpmoverlapcsf0.2101425975561142
tpmoverlapgm0.5417741537094116
tpmoverlapwm0.53956139087677
wm2max0.7075749825412994

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum1834379f8ff8414c94a04eac75bc8540
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.